| 60S ribosomal protein L23a, putative [Q4QJ20] | |
|---|---|
| Systematic Name | LmjF.06.0570 [Leishmania major] |
| Gene Name | LMJF_06_0570 |
| Molecular Weight | 16336 Da |
| Protein Sequence Size | 145 |
| Function | |
| Charge | 24 |
| Isoelectric Point | 11.2313 pH |
| Description | 60S ribosomal protein L23a, putative. |
| Subcellular Location | ribosome[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QJ20|Q4QJ20_LEIMA 60S ribosomal protein L23a, putative - Leishmania major. PPAQKTAKKAAPKDAKATKVVKVTTRKSYTRPQFRRPHTYRKPAMAKPSNRVTVESKDIA AFNVIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAMRKLYQVKAVKVNTLIRPDG LKKAYIRLSAAHDALDTANKIGLV |
| DNA Sequence | >LmjF06.0570 |||60S ribosomal protein L23a, putative|Leishmania major|chr 6|||Manual ATGCCTCCTG CTCAGAAGAC CGCCAAGAAG GCCGCGCCAA AGGATGCGAA GGCGACCAAGGTCGTCAAGG TGACGACGCG CAAGTCGTAC ACCCGCCCCC AGTTTCGCCG CCCTCACACCTACCGCAAGC CGGCAATGGC AAAGCCGAGC AACCGCGTGA CCGTGGAGTC GAAGGATATTGCGGCCTTCA ATGTGATCCG CTACCCGCTG ACGACAGACA AGGCGATGAA GAAGATCGAGGAGAACAACA CCCTGACCTT CATCGTTGAT TCCCGCGCCA ACAAGACTGA GATCAAGAAGGCAATGCGCA AGCTGTACCA GGTGAAGGCC GTGAAGGTCA ACACCCTGAT CCGTCCGGATGGTCTGAAGA AGGCGTACAT CCGCCTGTCT GCGGCCCACG ATGCTCTGGA CACTGCCAACAAGATCGGTC TTGTCTAA |
| 60S ribosomal protein L23a, putative Q4QJ20] | |
|---|---|
| Metabolite Information | |
| Molecular Function | RNA binding; structural constituent of ribosome |
| Biochemical Pathway | protein biosynthesis; ribosome biogenesis |
| Regulatory Pathway | |
| KEGG Pathways | K02893 |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | ribosomal protein L23a [Homo sapiens] | 53 | 3e-30 | 127 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| YOL127w ribosomal protein L23a.e | Saccharomyces cerevisiae | 45% | 2e-25 | 108 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00595 | Formate--tetrahydrofolate ligase signatures | 82-85; 94-97; | PS00722 | |
| PDOC00049 | Ribosomal protein L23 signature | 123-138; | PS00050 | |
| Acylation | N-myristoylation site | 121-126; | PS00008 | |
| Glycosylation | N-glycosylation site | 82-85; 94-97; | PS00001 | |
| Phosphorylation | Protein kinase C phosphorylation site | 7-9; 25-27; 26-28; 40-42; 50-52; 72-74; | PS00005 | |
| 60S ribosomal protein L23a, putative [Q4QJ20] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 2j374 | |
| Percent Identity | 51% | |
| Target Region | 62-145 | |
| Template Region | 69-149 | |
| Domain Information | ||
|---|---|---|
| Domains | Start | End |
| Active Site Information | ||
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| Residue | Active Site Number | Functional Part |
| Co-Factor | |
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| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/4164279/Q4QJ20.pdb 2.0 84 = residues | | = | *| Ramachandran plot: 87.2% core 6.4% allow 5.1% gener 1.3% = disall | | = | *| All Ramachandrans: 6 labelled residues (out of 82) = | | Chi1-chi2 plots: 0 labelled residues (out of 55) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 5.0 Bad contacts: = 8 | *| Bond len/angle: 15.7 Morris et al class: 1 = 1 2 | +| 1 cis-peptides = | +| G-factors Dihedrals: -0.12 Covalent: -0.91 Overall: = -0.38 | | = | | M/c bond lengths: 97.8% within limits 2.2% highlighted = | *| M/c bond angles: 87.3% within limits 12.7% highlighted 5 off = graph | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |