| 40S ribosomal protein S9, putative [Q4QIM3] | |
|---|---|
| Systematic Name | LmjF.07.0680 [Leishmania major] |
| Gene Name | LMJF_07_0680 |
| Molecular Weight | 22142 Da |
| Protein Sequence Size | 190 |
| Function | |
| Charge | 22.5 |
| Isoelectric Point | 11.2752 pH |
| Description | 40S ribosomal protein S9, putative. |
| Subcellular Location | cytosolic small ribosomal subunit (sensu Eukaryota); intracellular; small ribosomal subunit[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QIM3|Q4QIM3_LEIMA 40S ribosomal protein S9, putative - Leishmania major. RNYNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTL PENHPRRLLEGSAIMRRCHEYGFLDEEKDKLDYVLSLTVPDILERRLQTIVFKAGLAKSV HHARVLIQQRHIAVAKQIVTIPSFIVRVSSERHIAFADASPFGNGRTGRVKRVRAKAAKR HAGGGDDDE |
| DNA Sequence | >LmjF07.0680 |||40S ribosomal protein S9, putative|Leishmania major|chr 7|||Manual ATGCGCAACT ACAACAACTT CAACCGCGTG TGGAAGGCGC CGCGCCGTCC GTTCGAGAAGGAGCGCCTCG ACCGCGAGAT GAAGCTCTGT GGTCAGTACG GTCTGCGCTG CAAGCGTGAAATCTGGCGTG TGAACATGAC GCTGTCCAAG ATGCGCCGCA CGGCCCGTCT GCTGCTGACGCTGCCGGAGA ACCACCCCCG CCGTCTGCTG GAGGGTTCCG CCATCATGCG CCGCTGCCACGAGTACGGCT TCCTCGACGA GGAGAAGGAC AAGCTGGATT ACGTGCTGTC GCTGACGGTGCCGGACATTC TCGAGCGCCG CCTGCAGACC ATCGTCTTCA AGGCCGGTCT CGCCAAGTCCGTGCACCACG CCCGCGTCCT GATTCAGCAG CGCCACATCG CCGTCGCCAA GCAGATTGTGACGATCCCGT CCTTCATCGT GCGCGTGAGC AGTGAGCGCC ACATCGCCTT CGCCGATGCTTCGCCGTTCG GCAACGGCCG CACTGGCCGC GTCAAGCGCG TGCGCGCGAA GGCCGCCAAGCGCCACGCCG GCGGCGGCGA TGACGACGAG TAA |
| 40S ribosomal protein S9, putative Q4QIM3] | |
|---|---|
| Metabolite Information | |
| Molecular Function | RNA binding; structural constituent of ribosome |
| Biochemical Pathway | protein biosynthesis |
| Regulatory Pathway | |
| KEGG Pathways | K02997 |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | ribosomal protein S9 [Homo sapiens] | 64 | 6e-53 | 203 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| rpsD ribosomal protein S4 (BS4) | Bacillus subtilis | 29% | 0.00007 | 41.2 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00549 | Ribosomal protein S4 signature | 104-128; | PS00632 | |
| PDOC50889 | S4 RNA-binding domain profile | 11.052 | 106-177 | PS50889 |
| PDOC00015 | The rule PS00015 has been deleted from the PROSITE database and replaced by the following motif: PS50079 (Bipartite nuclear localization signal profile | 38-54; | PS00015 | |
| Acylation | N-myristoylation site | 116-121; 164-169; | PS00008 | |
| Glycosylation | N-glycosylation site | 45-48; | PS00001 | |
| Phosphorylation | Casein kinase II phosphorylation site | 60-63; 99-102; | PS00006 | |
| Phosphorylation | Protein kinase C phosphorylation site | 54-56; 151-153; 168-170; | PS00005 | |
| 40S ribosomal protein S9, putative [Q4QIM3] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 1s1hD | |
| Percent Identity | 63% | |
| Target Region | 19-190 | |
| Template Region | 20-177 | |
| Domain Information | ||
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| Domains | Start | End |
| Active Site Information | ||
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| Residue | Active Site Number | Functional Part |
| Co-Factor | |
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| Metal | Description |
| Ligands | |||||
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| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| Mutational Information | ||
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| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/101680/Q4QIM3.pdb 2.0 172 = residues | | = | *| Ramachandran plot: 85.1% core 9.7% allow 3.2% gener 1.9% = disall | | = | *| All Ramachandrans: 10 labelled residues (out of 170) = | *| Chi1-chi2 plots: 4 labelled residues (out of 112) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 18.0 Bad contacts: = 9 | *| Bond len/angle: 9.0 Morris et al class: 1 = 1 2 | | = | | G-factors Dihedrals: -0.11 Covalent: -0.39 Overall: = -0.21 | | = | | M/c bond lengths: 99.1% within limits 0.9% highlighted = | *| M/c bond angles: 89.2% within limits 10.8% highlighted 1 off = graph | +| Planar groups: 98.5% within limits 1.5% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |