| Programmed cell death 6 protein-like protein [Q4QG08] | |
|---|---|
| Systematic Name | LmjF.13.1460 [Leishmania major] |
| Gene Name | LMJF_13_1460 |
| Molecular Weight | 26001 Da |
| Protein Sequence Size | 234 |
| Function | |
| Charge | -1.5 |
| Isoelectric Point | 6.1519 pH |
| Description | Programmed cell death 6 protein-like protein. |
| Subcellular Location | N.A.[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QG08|Q4QG08_LEIMA Programmed cell death 6 protein-like protein - Leishmania major. AYPYNAYLGYTQPPTQYGQPPVVAGAHGHLPVTTPLPYNAQSAYGGAQPPMPTSTGVYAP SARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSG EITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKF DRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSIL |
| DNA Sequence | >LmjF13.1460 |||programmed cell death 6 protein-like protein|Leishmania major|chr 13|||Manual ATGGCATACC CGTATAACGC ATACCTCGGC TACACTCAGC CGCCCACGCA ATACGGCCAGCCTCCTGTGG TGGCAGGGGC CCACGGTCAC CTGCCTGTGA CGACGCCGCT GCCGTACAACGCCCAAAGCG CCTACGGCGG CGCACAGCCA CCGATGCCGA CCTCCACCGG CGTGTACGCCCCTTCAGCTC GGCACATGAA CGACAACCAA GAGCTGATGG AGTGGTTCCG CGCGGTCGACACGGATGGTA GCGGCGCCAT CAGCGTACCA GAGCTGAACG CGGCCTTGTC GTCCGCCGGCGTGCCGTTCA GCCTCGCCAC GACGGAGAAG TTGCTGCACA TGTACGATAA AAACCATAGCGGCGAGATCA CCTTCGACGA GTTCAAAGAT CTCCATCATT TCATTTTGAG CATGAGGGAAGGCTTCCGCA AGCGCGACTC CAGCGGCGAT GGTCGGCTCG ACAGCAACGA GGTGCGCGCCGCCCTCCTCT CGAGCGGCTA TCAGGTCTCG GAGCAGACGT TCCAGGCCTT GATGCGCAAGTTTGACCGTC AGCGCCGCGG CAGCCTCGGC TTCGACGACT ATGTCGAGCT CTCCATCTTCGTTTGTAGGG TGCGCAACGT CTTCGCCTTT TACGACCGCG AACGCACGGG TCAGGTCACATTCACCTTTG ACACCTTCAT CGGTGGTAGC GTCTCCATCC TGTAG |
| Programmed cell death 6 protein-like protein Q4QG08] | |
|---|---|
| Metabolite Information | |
| Molecular Function | calcium ion binding |
| Biochemical Pathway | |
| Regulatory Pathway | |
| KEGG Pathways | |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | programmed cell death 6 [Homo sapiens] | 33 | 1e-24 | 110 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| YOR257w spindle pole body component, centrin | Saccharomyces cerevisiae | 20% | 0.0008 | 38.1 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00018 | EF-hand calcium-binding domain signature and profile | 80-92; 116-128; 146-158; | PS00018 | |
| PDOC00018 | EF-hand calcium-binding domain signature and profile | 13.258; 12.282; 8.237; 6.926 | 67-102; 103-138; 139-168; 169-204 | PS50222 |
| Acylation | N-myristoylation site | 100-105; 228-233; | PS00008 | |
| Glycosylation | N-glycosylation site | 118-121; | PS00001 | |
| Phosphorylation | cAMP- and cGMP-dependent protein kinase phosphorylation site | 144-147; 185-188; | PS00004 | |
| Phosphorylation | Casein kinase II phosphorylation site | 88-91; 124-127; 137-140; 147-150; | PS00006 | |
| Phosphorylation | Protein kinase C phosphorylation site | 62-64; 108-110; 137-139; | PS00005 | |
| Programmed cell death 6 protein-like protein [Q4QG08] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 1y1xB | |
| Percent Identity | 100% | |
| Target Region | 54-234 | |
| Template Region | 11-174 | |
| Domain Information | ||
|---|---|---|
| Domains | Start | End |
| Active Site Information | ||
|---|---|---|
| Residue | Active Site Number | Functional Part |
| Co-Factor | |
|---|---|
| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| 17787-72-3 | CALCIUM ION | 40.078 | Ca | [Ca+2] | 1y1x |
| 14808-79-8 | SULFATE ION | 96.063 | O4 S   | [O-]S([O-])(=O)=O | 1y1x |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/2386569/Q4QG08.pdb 2.0 181 = residues | | = | | Ramachandran plot: 95.1% core 4.9% allow 0.0% gener 0.0% = disall | | = | | All Ramachandrans: 0 labelled residues (out of 179) = | | Chi1-chi2 plots: 0 labelled residues (out of 109) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 2.0 Bad contacts: = 2 | *| Bond len/angle: 8.9 Morris et al class: 1 = 1 1 | | = | | G-factors Dihedrals: 0.32 Covalent: -0.04 Overall: = 0.19 | | = | | M/c bond lengths: 99.7% within limits 0.3% highlighted = | *| M/c bond angles: 95.7% within limits 4.3% highlighted 1 off = graph | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |