| Cytochrome c, putative [Q4QEN5] | |
|---|---|
| Systematic Name | LmjF.16.1310 [Leishmania major] |
| Gene Name | LMJF_16_1310 |
| Molecular Weight | 12188 Da |
| Protein Sequence Size | 113 |
| Function | |
| Charge | 6.5 |
| Isoelectric Point | 10.1901 pH |
| Description | Cytochrome c, putative. |
| Subcellular Location | Mitochondrion[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QEN5|Q4QEN5_LEIMA Cytochrome c, putative - Leishmania major. PPKARAPLPPGDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSK ANAESGVIWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK |
| DNA Sequence | >LmjF16.1310 |||cytochrome c, putative|Leishmania major|chr 16|||Manual ATGCCGCCGA AGGCTCGTGC CCCTCTGCCG CCTGGTGACG TGGAGCGCGG CGAGAAGCTGTTCAAGGGCC GCGCTGCTCA GTGCCACACC GCGACCAAGG GCGGCTCGAA CGGTGTGGGCCCGAACCTGT TCGGCATCGT CAACCGTCCC TCCGGCAAGG TCGAGGGCTT CACGTACAGCAAGGCGAACG CCGAGTCAGG CGTAATCTGG ACGCCGGAAG TGCTGGACGT GTACCTGGAGAACCCGAAGA AGTTTATGCC TGGCACGAAG ATGTCGTTTG CCGGCATCAA GAAGCCGCAGGAGCGCGCTG ACGTGATCGC GTACCTCGAG ACTCTCAAGT AA |
| Cytochrome c, putative Q4QEN5] | |
|---|---|
| Metabolite Information | |
| Molecular Function | electron transporter activity; heme binding |
| Biochemical Pathway | aerobic respiration; electron transport |
| Regulatory Pathway | |
| KEGG Pathways | K08738 |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | cytochrome c [Homo sapiens] | 54 | 4e-29 | 122 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| YNL039w TFIIIB subunit, 90 kD | Saccharomyces cerevisiae | 27% | 0.072 | 29.6 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00169 | C-type cytochrome superfamily profiles | 14.491 | 12-113 | PS51007 |
| Acylation | N-myristoylation site | 34-39; 38-43; 88-93; | PS00008 | |
| Phosphorylation | Protein kinase C phosphorylation site | 51-53; 111-113; | PS00005 | |
| Cytochrome c, putative [Q4QEN5] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 2pcbB | |
| Percent Identity | 57% | |
| Target Region | 1-113 | |
| Template Region | 1-104 | |
| Domain Information | ||
|---|---|---|
| Domains | Start | End |
| Active Site Information | ||
|---|---|---|
| Residue | Active Site Number | Functional Part |
| Co-Factor | |
|---|---|
| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| 104414-01-9 | PROTOPORPHYRIN IX CONTAINING FE | 616.487 | C34 H32 Fe N4 O4 | Cc1c2n3c(c1C=C)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C=C)C)CCC(=O)O)C | 2pcb |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/3857050/Q4QEN5.pdb 2.0 113 = residues | | = | | Ramachandran plot: 96.6% core 3.4% allow 0.0% gener 0.0% = disall | | = | +| All Ramachandrans: 2 labelled residues (out of 111) = | +| Chi1-chi2 plots: 1 labelled residues (out of 59) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | | Residue properties: Max.deviation: 2.5 Bad contacts: = 0 | +| Bond len/angle: 4.8 Morris et al class: 1 = 1 2 | | = | | G-factors Dihedrals: -0.04 Covalent: -0.27 Overall: = -0.13 | | = | | M/c bond lengths: 97.3% within limits 2.7% highlighted = | | M/c bond angles: 89.9% within limits 10.1% highlighted = | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |