| Trafficking protein particle complex subunit-like protein [Q4QEM6] | |
|---|---|
| Systematic Name | LmjF.16.1400 [Leishmania major] |
| Gene Name | LMJF_16_1400 |
| Molecular Weight | 21554 Da |
| Protein Sequence Size | 196 |
| Function | |
| Charge | -6.5 |
| Isoelectric Point | 4.7 pH |
| Description | Trafficking protein particle complex subunit-like protein. |
| Subcellular Location | integral to membrane; TRAPP complex[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QEM6|Q4QEM6_LEIMA Trafficking protein particle complex subunit-like protein - Leishmania major. SSSAHTSTSAAQLGDAAFDNNVKMSAEFLALTYGALVQQMVEELTQEDAVEQVNQQLYNM GHRIGARLIEEYSVRSGAAPCRTFSQAAEGVALVGLRMFLGVSAEVAQVKDAADTFAISF QDNPLALFVELPDGPLREYLWYSNLLCGVITGALSLVGLQTEARFSRDRLRGDSKNEIIL HFKGRERETFQVERN |
| DNA Sequence | >LmjF16.1400 |||trafficking protein particle complex subunit-like protein|Leishmania major|chr 16|||Manual ATGTCGTCAT CTGCCCACAC GTCCACCTCT GCCGCGCAGC TGGGCGATGC AGCCTTCGACAACAACGTGA AGATGAGCGC CGAGTTCTTA GCCCTCACAT ACGGCGCTCT TGTGCAGCAGATGGTCGAGG AGCTCACTCA GGAAGACGCT GTGGAGCAGG TGAATCAGCA GCTCTACAATATGGGCCACC GAATCGGCGC TCGGCTGATC GAGGAGTACA GCGTTCGCAG CGGCGCTGCTCCGTGCCGCA CCTTTAGCCA GGCCGCAGAA GGCGTCGCTC TTGTTGGGCT CCGCATGTTTCTCGGCGTGA GTGCGGAGGT GGCACAGGTG AAGGACGCAG CCGATACGTT TGCGATCAGTTTCCAAGATA ACCCGCTCGC CCTATTCGTG GAGCTGCCGG ATGGACCGCT GCGGGAGTACCTGTGGTATT CGAACCTACT CTGTGGCGTC ATTACTGGCG CGCTGAGCCT TGTCGGGCTGCAGACGGAAG CCCGCTTCTC ACGCGACAGG CTGCGCGGCG ACTCCAAGAA CGAGATAATCCTTCACTTCA AGGGGCGGGA GCGGGAAACG TTTCAGGTGG AGCGCAACTA G |
| Trafficking protein particle complex subunit-like protein Q4QEM6] | |
|---|---|
| Metabolite Information | |
| Molecular Function | molecular function unknown |
| Biochemical Pathway | ER to Golgi vesicle-mediated transport |
| Regulatory Pathway | |
| KEGG Pathways | |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | BET3 homolog [Homo sapiens] | 43 | 2e-31 | 132 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| YKR068c involved in targeting and fusion of ER to golgi transport ve | Saccharomyces cerevisiae | 36% | 3e-28 | 118 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00016 | Cell attachment sequence | 172-174; | PS00016 | |
| Acylation | N-myristoylation site | 78-83; 149-154; | PS00008 | |
| Phosphorylation | Casein kinase II phosphorylation site | 46-49; 120-123; 175-178; | PS00006 | |
| Phosphorylation | Protein kinase C phosphorylation site | 74-76; | PS00005 | |
| Trafficking protein particle complex subunit-like protein [Q4QEM6] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 2pwnA | |
| Percent Identity | 43% | |
| Target Region | 24-188 | |
| Template Region | 13-156 | |
| Domain Information | ||
|---|---|---|
| Domains | Start | End |
| Active Site Information | ||
|---|---|---|
| Residue | Active Site Number | Functional Part |
| Co-Factor | |
|---|---|
| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| 544-63-8 | MYRISTIC ACID | 228.371 | C14 H28 O2 | O=C(O)CCCCCCCCCCCCC | 2pwn |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/960572/Q4QEM6.pdb 2.0 165 = residues | | = | +| Ramachandran plot: 89.7% core 8.9% allow 1.4% gener 0.0% = disall | | = | *| All Ramachandrans: 5 labelled residues (out of 163) = | | Chi1-chi2 plots: 0 labelled residues (out of 99) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 2.4 Bad contacts: = 2 | *| Bond len/angle: 6.9 Morris et al class: 1 = 1 2 | | = | | G-factors Dihedrals: 0.07 Covalent: -0.17 Overall: = -0.02 | | = | | M/c bond lengths: 99.6% within limits 0.4% highlighted = | | M/c bond angles: 92.5% within limits 7.5% highlighted = | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |