| RNA-binding protein, putative, UPB2 [Q4QA45] | |
|---|---|
| Systematic Name | LmjF.25.0500 [Leishmania major] |
| Gene Name | LMJF_25_0500 |
| Molecular Weight | 18982 Da |
| Protein Sequence Size | 167 |
| Function | |
| Charge | 6.5 |
| Isoelectric Point | 9.6959 pH |
| Description | RNA-binding protein, putative, UPB2. |
| Subcellular Location | Nuclear[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4QA45|Q4QA45_LEIMA RNA-binding protein, putative, UPB2 - Leishmania major AQHMAPQQQPPQQQPPQQVYNPEPEALRNLMVNYIPTTVDEVQLRQLFERFGPIEGVKIV CDRETRQSRGYGFVKYHSAASAQQAVNELNGFNILNKRLKVALAASGNQRQRNYNPHQNA NPAANMGYYGGNFAAGYPQANPYAQQQMMAMQQQYMMQQPGQQPRQ |
| DNA Sequence | >LmjF25.0500 |||RNA-binding protein, putative, UPB2|Leishmania major|chr 25|||Manual ATGGCGCAGC ACATGGCCCC TCAGCAGCAG CCGCCCCAGC AGCAGCCGCC GCAGCAGGTGTACAACCCTG AGCCGGAGGC ACTGCGTAAC CTGATGGTGA ACTACATCCC CACAACTGTCGATGAGGTGC AGCTCCGCCA GCTGTTCGAG CGCTTTGGCC CGATCGAGGG CGTCAAGATCGTGTGCGACC GCGAGACGCG CCAGAGCCGC GGATACGGCT TCGTGAAGTA CCACTCGGCGGCGTCCGCGC AGCAGGCTGT GAACGAGCTG AACGGGTTCA ACATCCTGAA CAAGCGCCTGAAGGTTGCGC TTGCCGCGTC GGGCAACCAG CGCCAGCGCA ACTACAACCC GCATCAGAACGCGAACCCTG CTGCGAACAT GGGGTACTAC GGTGGCAACT TCGCTGCCGG CTACCCGCAGGCGAACCCGT ACGCGCAGCA GCAGATGATG GCGATGCAGC AGCAGTACAT GATGCAGCAGCCGGGACAGC AGCCCCGCCA GTAA |
| RNA-binding protein, putative, UPB2 Q4QA45] | |
|---|---|
| Metabolite Information | |
| Molecular Function | RNA binding; nucleic acid binding |
| Biochemical Pathway | RNA processing |
| Regulatory Pathway | |
| KEGG Pathways | |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) [Homo sapiens] | 39 | 0.0000000000001 | 73 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| YGL044c component of pre-mRNA 3'-end processing factor CF I | Saccharomyces cerevisiae | 26% | 0.00000002 | 52.4 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00030 | Eukaryotic RNA recognition motif profile | 18.223 | 29-107 | PS50102 |
| PDOC50099 | Sequence regions enriched in a particular amino acids | 8.753 | 140-167 | PS50322 |
| Acylation | N-myristoylation site | 131-136; 132-137; | PS00008 | |
| Phosphorylation | Casein kinase II phosphorylation site | 38-41; 39-42; | PS00006 | |
| RNA-binding protein, putative, UPB2 [Q4QA45] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 1u6fA | |
| Percent Identity | 86% | |
| Target Region | 15-159 | |
| Template Region | 15-139 | |
| Domain Information | ||
|---|---|---|
| Domains | Start | End |
| Active Site Information | ||
|---|---|---|
| Residue | Active Site Number | Functional Part |
| Co-Factor | |
|---|---|
| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/3283392/Q4QA45.pdb 2.0 145 = residues | | = | *| Ramachandran plot: 83.3% core 12.5% allow 3.3% gener 0.8% = disall | | = | *| All Ramachandrans: 15 labelled residues (out of 143) = | | Chi1-chi2 plots: 0 labelled residues (out of 88) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 4.0 Bad contacts: = 10 | *| Bond len/angle: 6.3 Morris et al class: 1 = 1 3 | | = | | G-factors Dihedrals: -0.08 Covalent: -0.24 Overall: = -0.14 | | = | | M/c bond lengths: 97.8% within limits 2.2% highlighted = | | M/c bond angles: 92.3% within limits 7.7% highlighted = | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |