| 60S ribosomal protein L9, putative [Q4Q6V5] | |
|---|---|
| Systematic Name | LmjF.30.3340 [Leishmania major] |
| Gene Name | LMJF_30_3340 |
| Molecular Weight | 21526 Da |
| Protein Sequence Size | 190 |
| Function | |
| Charge | 17 |
| Isoelectric Point | 10.56 pH |
| Description | 60S ribosomal protein L9, putative. |
| Subcellular Location | intracellular; ribosome[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4Q6V5|Q4Q6V5_LEIMA 60S ribosomal protein L9, putative - Leishmania major VKVKSLCTLQIPEGVTVDVKGRKVTVTGKRGTLTKDLTHLQLDLRVDKKNRTFTVIRWFG SKIPIACLNTTKAHVQNMITGVTKGYRFKVRCAYAHFPINVSVDGQNIEVRNFLGEKRVR RQLVPNTVKVSQTDPSKVKDEIVFDGNDLEQVSREAAVLHQMCLVKKKDIRKFLDGIYVQ TKTNIEGTE |
| DNA Sequence | >LmjF30.3340 |||60S ribosomal protein L9, putative|Leishmania major|chr 30|||Manual ATGGTCAAGG TCAAGAGCCT CTGCACCCTG CAGATCCCGG AGGGTGTGAC CGTCGATGTGAAGGGCCGCA AGGTCACTGT CACGGGTAAG CGCGGCACCC TCACGAAGGA CCTGACGCACCTGCAGCTGG ACTTGCGCGT GGACAAAAAG AATCGCACCT TCACGGTGAT TCGCTGGTTCGGCTCCAAGA TCCCGATCGC GTGCCTGAAC ACCACCAAGG CGCACGTGCA GAACATGATCACTGGCGTGA CGAAGGGCTA CCGCTTCAAG GTGCGCTGCG CCTACGCTCA CTTTCCGATCAACGTCTCTG TGGATGGTCA GAACATCGAG GTCCGCAACT TCCTTGGTGA GAAGCGCGTGCGCCGCCAGC TGGTGCCCAA CACCGTGAAG GTGAGCCAGA CCGACCCGTC CAAGGTCAAGGATGAGATCG TCTTCGACGG CAACGACCTG GAACAGGTGT CCCGCGAGGC CGCCGTGCTGCACCAGATGT GCCTGGTCAA GAAGAAGGAT ATCCGTAAGT TCCTTGACGG TATCTACGTCCAGACCAAGA CCAACATTGA GGGTACGGAA TAG |
| 60S ribosomal protein L9, putative Q4Q6V5] | |
|---|---|
| Metabolite Information | |
| Molecular Function | structural constituent of ribosome |
| Biochemical Pathway | protein biosynthesis; ribosome biogenesis |
| Regulatory Pathway | |
| KEGG Pathways | K02940 |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | ribosomal protein L9 [Homo sapiens] | 46 | 1e-41 | 166 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| rplF 50S ribosomal protein L6 | Staphylococcus aureus | 34% | 0.000008 | 44.3 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00595 | Formate--tetrahydrofolate ligase signatures | 51-54; 70-73; 101-104; | PS00722 | |
| PDOC00454 | Ribosomal protein L6 signatures | 162-183; | PS00700 | |
| Acylation | N-myristoylation site | 82-87; | PS00008 | |
| Amidation | Amidation site | 21-24; 28-31; | PS00009 | |
| Phosphorylation | cAMP- and cGMP-dependent protein kinase phosphorylation site | 23-26; 30-33; | PS00004 | |
| Phosphorylation | Casein kinase II phosphorylation site | 132-135; 184-187; | PS00006 | |
| Phosphorylation | Protein kinase C phosphorylation site | 28-30; 71-73; 128-130; | PS00005 | |
| Phosphorylation | Tyrosine kinase phosphorylation site | 172-179; | PS00007 | |
| 60S ribosomal protein L9, putative [Q4Q6V5] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 1s1iH | |
| Percent Identity | 51% | |
| Target Region | 1-190 | |
| Template Region | 7-178 | |
| Domain Information | ||
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| Domains | Start | End |
| Active Site Information | ||
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| Residue | Active Site Number | Functional Part |
| Co-Factor | |
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| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/1467513/Q4Q6V5.pdb 2.0 190 = residues | | = | *| Ramachandran plot: 63.2% core 24.0% allow 8.8% gener 4.1% = disall | | = | *| All Ramachandrans: 38 labelled residues (out of 188) = | +| Chi1-chi2 plots: 3 labelled residues (out of 114) = | | = | +| Main-chain params: 5 better 0 inside 1 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 7.6 Bad contacts: = 24 | *| Bond len/angle: 8.9 Morris et al class: 3 = 1 3 | | = | +| G-factors Dihedrals: -0.47 Covalent: -0.70 Overall: = -0.53 | | = | | M/c bond lengths: 96.7% within limits 3.3% highlighted = | *| M/c bond angles: 85.1% within limits 14.9% highlighted 3 off = graph | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |