| 40S ribosomal protein S18, putative [Q4Q1Y2] | |
|---|---|
| Systematic Name | LmjF.36.0940 [Leishmania major] |
| Gene Name | LMJF_36_0940 |
| Molecular Weight | 17394 Da |
| Protein Sequence Size | 153 |
| Function | |
| Charge | 19.5 |
| Isoelectric Point | 11.2321 pH |
| Description | 40S ribosomal protein S18, putative. |
| Subcellular Location | cytosolic small ribosomal subunit (sensu Eukaryota); intracellular; organellar small ribosomal subunit; ribosome[Predict] |
| E. C. Number | N.A. |
| Sequence | >tr|Q4Q1Y2|Q4Q1Y2_LEIMA 40S ribosomal protein S18, putative - Leishmania major SLTLIPDHFQHIVRLLNTNVEGKRKVPFALRMVKGVGIRFAYLVCKKAGIDVERRAGTLT AEELEKIAEIIADPAKFKIPDWFLNRQRDPKTGKTEHLSSSMVDTRLRDDLERLKKMRAH RGVRHAYGLRVRGQHTCTSGRHGKTVGVSRGK |
| DNA Sequence | >LmjF36.0940 |||40S ribosomal protein S18, putative|Leishmania major|chr 36|||Manual ATGTCTCTGA CGCTTATCCC TGACCACTTC CAGCACATTG TGCGTCTGCT CAACACGAATGTGGAGGGCA AGCGCAAGGT GCCGTTCGCG CTGCGCATGG TGAAGGGCGT TGGTATCCGCTTTGCCTACC TGGTGTGCAA GAAGGCCGGG ATTGACGTGG AGCGCCGCGC GGGCACTCTGACCGCGGAGG AGCTGGAGAA GATCGCCGAG ATCATCGCCG ACCCCGCGAA GTTCAAGATCCCGGACTGGT TCCTGAACCG TCAGCGCGAC CCCAAGACCG GCAAGACGGA GCACCTGTCCAGCTCGATGG TGGACACCCG CCTGCGCGAC GACCTTGAGC GCCTGAAGAA GATGCGCGCGCACCGTGGCG TGCGTCACGC CTACGGCCTC CGCGTGCGCG GCCAGCACAC GTGCACGAGTGGCCGCCACG GCAAGACGGT CGGCGTCTCC CGCGGCAAGT AA |
| 40S ribosomal protein S18, putative Q4Q1Y2] | |
|---|---|
| Metabolite Information | protein biosynthesis |
| Molecular Function | |
| Biochemical Pathway | |
| Regulatory Pathway | |
| KEGG Pathways | K02964 |
| Orthologs | ||||
| Homologs | GI | Percent Identity | Evalue | Score |
| Homo sapiens | ribosomal protein S18 [Homo sapiens] | 56 | 6e-46 | 179 |
| DEG Information | ||||
| DEG Protein | DEG Organism | Percent Identity | Evalue | Bit Score |
| rpsM 30S ribosomal protein S13 | Staphylococcus aureus | 25% | 0.0002 | 38.9 |
| Post Translational Modification | ||||
| PTM Type | PTM Sub Type | Score | Modification Site | Prosite ID |
| PDOC00556 | Ribosomal protein S13 signature and profile | 122-135; | PS00646 | |
| PDOC00556 | Ribosomal protein S13 signature and profile | 30.42 | 16-146 | PS50159 |
| Acylation | N-myristoylation site | 38-43; 58-63; 123-128; 134-139; 148-153; | PS00008 | |
| Amidation | Amidation site | 22-25; | PS00009 | |
| Phosphorylation | Casein kinase II phosphorylation site | 19-22; 61-64; 102-105; | PS00006 | |
| Phosphorylation | Protein kinase C phosphorylation site | 93-95; 140-142; | PS00005 | |
| 40S ribosomal protein S18, putative [Q4Q1Y2] | ||
|---|---|---|
| Model Information | ||
| Template PDB ID | 1s1hM | |
| Percent Identity | 55% | |
| Target Region | 15-153 | |
| Template Region | 16-130 | |
| Domain Information | ||
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| Domains | Start | End |
| Active Site Information | ||
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| Residue | Active Site Number | Functional Part |
| Co-Factor | |
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| Metal | Description |
| Ligands | |||||
|---|---|---|---|---|---|
| CAS number | Name | Mol. Weight | Mol. Formula | Smile Notation | PDB Reference |
| Mutational Information | ||
|---|---|---|
| Residue | Feature | Description |
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| Modeled Protein | Template Structure |
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+----------<<< P R O C H E C K S U M = M A R Y >>>----------+ | = | | /var/www/html/Services/SAVES_3/jobs/348750/Q4Q1Y2.pdb 2.0 139 = residues | | = | *| Ramachandran plot: 88.3% core 10.0% allow 0.8% gener 0.8% = disall | | = | *| All Ramachandrans: 8 labelled residues (out of 137) = | *| Chi1-chi2 plots: 3 labelled residues (out of 85) = | | = | | Main-chain params: 6 better 0 inside 0 worse = | | Side-chain params: 5 better 0 inside 0 worse = | | = | *| Residue properties: Max.deviation: 18.7 Bad contacts: = 9 | *| Bond len/angle: 10.6 Morris et al class: 1 = 1 3 | | = | +| G-factors Dihedrals: -0.12 Covalent: -0.57 Overall: = -0.28 | | = | *| M/c bond lengths: 96.2% within limits 3.8% highlighted 2 off = graph | *| M/c bond angles: 89.8% within limits 10.2% highlighted 2 off = graph | | Planar groups: 100.0% within limits 0.0% highlighted = | | = | = +------------------------------------------------------------------------= ----+ + May be worth investigating further. * Worth investigating further. |